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Workshop Venue:

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Speaker Profile

Speaker Profile

dr asif khan

Dr. Mohammad Asif Khan is currently appointed as the Director of the Perdana University Centre for Bioinformatics (PU-CBi), Malaysia, Acting Dean of the Perdana University School of Data Sciences (PU-SDS), and Visiting Scientist for the Department of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine (JHUSOM), USA. He founded and established the PU-CBi in May 2014 and later PU-SDS in May 2015, which subsumed the existing Centre for Bioinformatics (PU-CBi) and saw the formation of a new Centre for Computing. His research interests are in the area of biological data warehousing and applications of bioinformatics to the study of immune responses, vaccines, venom toxins, drug design, and disease biomarkers.

He first published a scientific article during his undergraduate (BSc) honours year (2003) and to date (2016), he has authored/co-authored more than 40 international, peer-reviewed research and review articles in various international journals, books and conferences, and presented his work at numerous international conferences. He was involved in the development of several novel bioinformatics methodologies, tools, and specialized databases, and currently has three patent applications granted.

His teaching experiences (2006-2016) have been in bioinformatics, imparting to undergraduate/postgraduate students at the National University of Singapore (~1500 students over the years) and to medical and bioinformatics students at Perdana University (~80 students); and has assisted in the supervision of research projects of more than 50 students (45 bachelors, 3 masters and 5 PhDs). He is currently formally supervising four MSc (Bioinformatics) students and one PhD student at Perdana University. His publications include three peer-reviewed journal articles and two book chapters on bioinformatics education. He has led the curriculum development of a unique Postgraduate Diploma in Bioinformatics programme (http://bit.ly/10T5FfX) and an MSc (Bioinformatics) programme (by Research) (http://bit.ly/Zf8syP) at Perdana University, with the aim of providing students the foundation necessary to manage and mine the wealth of available biological data for knowledge discovery.

He is currently an ExCo member and Vice President (Corporate) of the Asia-Pacific Bioinformatics Network (APBioNET); he is also a Honorary Director of APBioNET Limited (LTD). His services to the scientific community include as a reviewer for several journals, conferences, and funding agencies, and has donned various important roles in the organization of several local and international bioinformatics conferences, meetings and workshops.

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Programme

    Day 1:
10 July 2017
     
Workshop Initiation Lecture 1: Introduction to Biological Databases and Bioinformatics Tools
Practical 1: Exploring Biological Databases and Bioinformatics Tools

   
    Day 2:
11 July 2017
     
Lecture 2: Fundamentals of Sequence Comparisons
Practical 2: Exploring Sequence Comparisons

   
    Day 3:
12 July 2017
     


Lecture 3: Basics of BLAST and Advanced Database Search
Practical 3: Exploring BLAST Flavours and Setting-up of a Searchable Database of Interest

   
    Day 4:
13 July 2017
     
Lecture 4: Biological Patterns and Profiles
Practical 4: Hunting for Biological Patterns and Profiles

   
    Day 5:
14 July 2017
     
Lecture 5: Principles of Molecular Evolution and Phylogenetics
Practical 5: Fundamentals Phylogenetics Analyses

   
    Day 6:
17 July 2017
     
Lecture 6: Basics of Structural Biology and Structural Databases
Practical 6: Visualization of 3D Structures

   
    Day 7:
18 July 2017
     
Open Book MCQ
Practical 7: Modeling of 3D Structures
Participant Symposium (Group Presentations on Assigned / Selected Topics)
Workshop Wrap-up: Certificate / Presentation and Closing Speech

   
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Bioinformatics Intro

AMDI - International Bioinformatics Workshop 2017

Introduction

In this seven-day workshop, we cover essential bioinformatics topics, such as biological databases and bioinformatics tools, sequence comparison including biological pattern / profile search, molecular phylogeny and 3D stucture visualisation and homology modelling, with hands-on practicals on the theories and concepts covered. This will empower the participants with the foundation necessary to manage and mine the wealth of available biological data to address complex research problems.

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Learning Outcomes

Learning outcomes from attending the workshop include understanding what is bioinformatics, appreciating its pivotal role in interdisciplinary research, and the ability to perform sequence based bioinformatics analysis.

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Who Should Attend?

The workshop is specifically designed for all individuals with both basic molecular biology and basic computer skills; this includes:

(i) students in life sciences (diploma, undergraduate or postgraduate),
(ii) scientists interested in bioinformatics, and
(iii) industry partners and IT professionals supporting biologists.

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Fees

Student     RM : 1000.00
Lecturer     RM : 1500.00
Corporate Sector     RM : 2000.00
International Participant     USD : 300.00
       
* 10% discount for those who register between 1st December 2016 - 31th January 2017
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